ADapt documentation

The full documentation opens as its own set of pages.

Page	What it covers
Overview	the problem ADapt solves, the interface, fragment categories
Getting started	running ADapt and loading an entry
The tree and the 3D view	navigating the structure
Writing the PDBQT files	the output files
Provenance in the PDBQT files	what is recorded in the output
ADapt and AGFRgui	differences between the two tools
Known issues	what is known to be wrong or missing