AGFR gallery

Images made with AutoGridFR (AGFR). Click an image to enlarge it.

Screenshot of AGFR v0.1: control panel on the left and a 3D view with a white docking box, green pocket points, a yellow ligand and orange flexible side chains.

Early AGFR interface showing a docking box, an AutoSite pocket and two flexible lysine side chains around a ligand. Source: AGFR page, adfr.scripps.edu.

Screenshot of AGFR 1.1 with a teal ribbon protein, a docking box, and green AutoSite pocket points next to a ligand.

AGFR places a docking box around the top-ranked AutoSite pocket of a kinase receptor. Source: AGFR website.

Screenshot of AGFR 1.2: control panel with the AutoSite pocket table on the left, and a 3D view of receptor 4EK3 in lines with magenta pocket points inside a white docking box.

AGFR 1.2 with receptor 4EK3: pocket 5 found by AutoSite 1.0 is selected, and its fill points (magenta) lie inside the docking box. Source: AGFR website.
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